IL_8VFT_049

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_049 not in the Motif Atlas

Geometric match to IL_8C3A_475

Geometric discrepancy: 0.2307

The information below is about IL_8C3A_475

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8VFT|1|5|C|1431
8VFT|1|5|G|1432
8VFT|1|5|A|1433
8VFT|1|5|G|1434
*
8VFT|1|5|C|1450
8VFT|1|5|G|1451
8VFT|1|5|A|1452
8VFT|1|5|G|1453

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain Q

eL18