IL_8VFT_056

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_056 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0735

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8VFT|1|5|G|1586
8VFT|1|5|G|1587
8VFT|1|5|U|1588
8VFT|1|5|C|1589
*
8VFT|1|5|G|1605
8VFT|1|5|U|1606
8VFT|1|5|C|1607

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain j

eL37