IL_8VFT_059

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUU*A(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_059 not in the Motif Atlas

Homologous match to IL_8P9A_262

Geometric discrepancy: 0.0858

The information below is about IL_8P9A_262

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8VFT|1|5|U|1671
8VFT|1|5|U|1672
8VFT|1|5|U|1673
*
8VFT|1|5|A|1682
8VFT|1|5|PSU|1683
8VFT|1|5|A|1684

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain Q

eL18

Chain T

eL21

Chain a

uL15

Chain b

eL29