IL_8VFT_064

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AA*UU(PSU)

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_064 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.1441

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8VFT|1|5|A|1737
8VFT|1|5|A|1738
*
8VFT|1|5|U|1790
8VFT|1|5|U|1791
8VFT|1|5|PSU|1792

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

uL18

Chain I

uL16

Chain T

eL21