IL_8VFT_068

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_068 not in the Motif Atlas

Geometric match to IL_1U9S_004

Geometric discrepancy: 0.3239

The information below is about IL_1U9S_004

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

8VFT|1|5|G|1753
8VFT|1|5|U|1754
8VFT|1|5|C|1755
8VFT|1|5|U|1756
*
8VFT|1|5|A|1776
8VFT|1|5|C|1777

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

uL18

Chain J

uL5