IL_8VFT_091

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

8VFT|1|5|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_091 not in the Motif Atlas

Homologous match to IL_8C3A_483

Geometric discrepancy: 0.5091

The information below is about IL_8C3A_483

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25360.1

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

8VFT|1|5|G|2549
8VFT|1|5|G|2550
*
8VFT|1|5|C|2768
8VFT|1|5|U|2769
8VFT|1|5|C|2770

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

eL34