IL_8VFT_092

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_092 not in the Motif Atlas

Homologous match to IL_8P9A_295

Geometric discrepancy: 0.2173

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8VFT|1|5|C|2589
8VFT|1|5|G|2590
8VFT|1|5|A|2591
8VFT|1|5|U|2592
8VFT|1|5|C|2593
*
8VFT|1|5|G|2752
8VFT|1|5|G|2753
8VFT|1|5|G|2754
8VFT|1|5|A|2755
8VFT|1|5|G|2756

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain Z

eL27

Chain g

eL34