IL_8VFT_095

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

8VFT|1|5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_095 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2334

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8VFT|1|5|C|2646
8VFT|1|5|A|2647
8VFT|1|5|G|2648
*
8VFT|1|5|C|2685
8VFT|1|5|G|2686
8VFT|1|5|U|2687
8VFT|1|5|G|2688

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

eL34