IL_8VFT_102

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

8VFT|1|5|G|3839

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_102 not in the Motif Atlas

Geometric match to IL_8C3A_484

Geometric discrepancy: 0.0984

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

8VFT|1|5|G|2847
8VFT|1|5|G|2848
8VFT|1|5|A|2849
8VFT|1|5|A|2850
8VFT|1|5|G|2851
8VFT|1|5|U|2852
8VFT|1|5|C|2853
8VFT|1|5|G|2854
8VFT|1|5|G|2855
*
8VFT|1|5|C|3837
8VFT|1|5|U|3838
8VFT|1|5|G|3839
8VFT|1|5|U|3840
8VFT|1|5|OMC|3841

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14