IL_8VFT_141

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_141 not in the Motif Atlas

Geometric match to IL_3R1D_003

Geometric discrepancy: 0.1816

The information below is about IL_3R1D_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8VFT|1|5|U|4580
8VFT|1|5|G|4581
8VFT|1|5|C|4582
*
8VFT|1|5|G|4721
8VFT|1|5|G|4722
8VFT|1|5|A|4723

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13