IL_8VFT_144
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VFT_144 not in the Motif Atlas
- Homologous match to IL_8P9A_344
- Geometric discrepancy: 0.1429
- The information below is about IL_8P9A_344
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
8VFT|1|5|C|4596
8VFT|1|5|U|4597
8VFT|1|5|C|4598
8VFT|1|5|A|4599
8VFT|1|5|G|4600
8VFT|1|5|U|4601
8VFT|1|5|A|4602
8VFT|1|5|C|4603
*
8VFT|1|5|G|4608
8VFT|1|5|G|4609
8VFT|1|5|A|4610
8VFT|1|5|A|4611
8VFT|1|5|C|4612
8VFT|1|5|C|4613
8VFT|1|5|G|4614
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain H
- uL6
- Chain V
- uL14
- Chain m
- eL40
- Chain v
- eEF2
Coloring options: