IL_8VFT_156

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

8VFT|1|5|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_156 not in the Motif Atlas

Geometric match to IL_1KUQ_002

Geometric discrepancy: 0.3339

The information below is about IL_1KUQ_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8VFT|1|5|C|4996
8VFT|1|5|G|4997
*
8VFT|1|5|U|5053
8VFT|1|5|C|5054
8VFT|1|5|G|5055

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain d

eL31