IL_8VFT_159

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

8VFT|1|5|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_159 not in the Motif Atlas

Homologous match to IL_8P9A_361

Geometric discrepancy: 0.3745

The information below is about IL_8P9A_361

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8VFT|1|5|G|5012
8VFT|1|5|C|5013
8VFT|1|5|A|5014
*
8VFT|1|5|U|5035
8VFT|1|5|C|5036

Current chains

Chain 5

28S rRNA

Nearby chains

Chain W

eL24