IL_8VFT_172

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAA*UGA(OMC)G

Length

9 nucleotides

Bulged bases

8VFT|1|9|A|516

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_172 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3432

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8VFT|1|9|C|37
8VFT|1|9|A|38
8VFT|1|9|A|39
8VFT|1|9|A|40
*
8VFT|1|9|U|514
8VFT|1|9|G|515
8VFT|1|9|A|516
8VFT|1|9|OMC|517
8VFT|1|9|G|518

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24