IL_8VFT_177

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAU*ACGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_177 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3423

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

8VFT|1|9|G|108
8VFT|1|9|U|109
8VFT|1|9|U|110
8VFT|1|9|A|111
8VFT|1|9|U|112
*
8VFT|1|9|A|349
8VFT|1|9|C|350
8VFT|1|9|G|351
8VFT|1|9|U|352
8VFT|1|9|C|353

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain II

eS8

Chain LL

uS17