IL_8VFT_179

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_179 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.2336

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8VFT|1|9|OMU|116
8VFT|1|9|C|117
8VFT|1|9|C|118
8VFT|1|9|PSU|119
8VFT|1|9|U|120
8VFT|1|9|OMU|121
*
8VFT|1|9|A|343
8VFT|1|9|U|344
8VFT|1|9|U|345
8VFT|1|9|C|346
8VFT|1|9|G|347

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain II

eS8