IL_8VFT_188

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8VFT|1|9|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_188 not in the Motif Atlas

Homologous match to IL_8C3A_412

Geometric discrepancy: 0.2955

The information below is about IL_8C3A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49054.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8VFT|1|9|G|411
8VFT|1|9|G|412
8VFT|1|9|G|413
*
8VFT|1|9|C|424
8VFT|1|9|G|425
8VFT|1|9|A|426
8VFT|1|9|U|427
8VFT|1|9|U|428
8VFT|1|9|C|429

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain XX

uS12