IL_8VFT_195

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_195 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1914

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8VFT|1|9|G|563
8VFT|1|9|A|564
8VFT|1|9|G|565
*
8VFT|1|9|C|585
8VFT|1|9|G|586
8VFT|1|9|A|587
8VFT|1|9|G|588
8VFT|1|9|G|589
8VFT|1|9|A|590
8VFT|1|9|U|591
8VFT|1|9|C|592

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain ee

eS30