IL_8VFT_199

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

8VFT|1|9|A2M|668

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_199 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1596

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8VFT|1|9|G|665
8VFT|1|9|U|666
8VFT|1|9|U|667
8VFT|1|9|A2M|668
8VFT|1|9|A|669
8VFT|1|9|A|670
8VFT|1|9|A|671
*
8VFT|1|9|U|1161
8VFT|1|9|C|1162

Current chains

Chain 9

18S rRNA

Nearby chains

Chain XX

uS12

Chain aa

eS26