IL_8VFT_206
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAAAA(5MU)U*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VFT_206 not in the Motif Atlas
- Homologous match to IL_8C3A_503
- Geometric discrepancy: 0.3932
- The information below is about IL_8C3A_503
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44416.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8VFT|1|9|G|807
8VFT|1|9|A|808
8VFT|1|9|A|809
8VFT|1|9|A|810
8VFT|1|9|A|811
8VFT|1|9|A|812
8VFT|1|9|A|813
8VFT|1|9|5MU|814
8VFT|1|9|U|815
*
8VFT|1|9|A|849
8VFT|1|9|C|850
8VFT|1|9|C|851
8VFT|1|9|G|852
8VFT|1|9|C|853
8VFT|1|9|A|854
8VFT|1|9|G|855
8VFT|1|9|C|856
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- eS4
- Chain JJ
- uS4
- Chain LL
- uS17
- Chain WW
- uS8
Coloring options: