IL_8VFT_209

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_209 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.1335

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8VFT|1|9|A|922
8VFT|1|9|G|923
*
8VFT|1|9|C|1019
8VFT|1|9|A|1020
8VFT|1|9|U|1021
8VFT|1|9|U|1022

Current chains

Chain 9

18S rRNA

Nearby chains

Chain NN

uS15

Chain WW

uS8

Chain bb

eS27