IL_8VFT_216
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VFT_216 not in the Motif Atlas
- Homologous match to IL_8C3A_442
- Geometric discrepancy: 0.1166
- The information below is about IL_8C3A_442
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8VFT|1|9|C|1047
8VFT|1|9|G|1048
8VFT|1|9|A|1049
8VFT|1|9|A|1050
8VFT|1|9|G|1051
*
8VFT|1|9|C|1067
8VFT|1|9|G|1068
8VFT|1|9|U|1069
8VFT|1|9|A|1070
8VFT|1|9|G|1071
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- uL2
- Chain OO
- uS11
- Chain aa
- eS26
Coloring options: