IL_8VFT_218
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VFT_218 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3204
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VFT|1|9|C|1098
8VFT|1|9|G|1099
8VFT|1|9|A|1100
8VFT|1|9|U|1101
8VFT|1|9|G|1102
8VFT|1|9|C|1103
*
8VFT|1|9|G|1129
8VFT|1|9|G|1130
8VFT|1|9|G|1131
8VFT|1|9|C|1132
8VFT|1|9|A|1133
8VFT|1|9|G|1134
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain AA
- uS2
- Chain BB
- eS1
- Chain NN
- uS15
- Chain RR
- eS17
- Chain aa
- eS26
- Chain bb
- eS27
Coloring options: