IL_8VFT_237

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

8VFT|1|9|C|1403, 8VFT|1|9|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_237 not in the Motif Atlas

Homologous match to IL_8P9A_445

Geometric discrepancy: 0.2651

The information below is about IL_8P9A_445

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

8VFT|1|9|A|1402
8VFT|1|9|C|1403
8VFT|1|9|U|1404
8VFT|1|9|A|1405
*
8VFT|1|9|U|1441
8VFT|1|9|U|1442
8VFT|1|9|C|1443
8VFT|1|9|U|1444

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

uS9

Chain UU

uS10