IL_8VFT_244

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8VFT|1|9|C|1701, 8VFT|1|9|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_244 not in the Motif Atlas

Homologous match to IL_8P9A_452

Geometric discrepancy: 0.2252

The information below is about IL_8P9A_452

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8VFT|1|9|C|1700
8VFT|1|9|C|1701
8VFT|1|9|G|1702
*
8VFT|1|9|C|1833
8VFT|1|9|A|1834
8VFT|1|9|A|1835
8VFT|1|9|G|1836

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain aa

eS26

Chain w

mRNA