IL_8VIO_001
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_001 not in the Motif Atlas
- Homologous match to IL_4WF9_001
- Geometric discrepancy: 0.0883
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VIO|1|A|G|21
8VIO|1|A|U|22
8VIO|1|A|G|23
8VIO|1|A|G|24
8VIO|1|A|A|25
8VIO|1|A|U|26
8VIO|1|A|G|27
*
8VIO|1|A|C|597
8VIO|1|A|U|598
8VIO|1|A|G|599
8VIO|1|A|A|600
8VIO|1|A|A|601
8VIO|1|A|A|602
8VIO|1|A|C|603
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain R
- 50S Ribosomal Protein L20
- Chain T
- 50S Ribosomal Protein L22
- Chain b
- 50S ribosomal protein L32
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