IL_8VIO_007

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_007 not in the Motif Atlas

Homologous match to IL_9DFE_007

Geometric discrepancy: 0.1377

The information below is about IL_9DFE_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8VIO|1|A|U|239
8VIO|1|A|G|240
8VIO|1|A|A|241
8VIO|1|A|G|242
8VIO|1|A|U|243
8VIO|1|A|A|244
8VIO|1|A|G|245
*
8VIO|1|A|C|253
8VIO|1|A|G|254
8VIO|1|A|A|255
8VIO|1|A|A|256
8VIO|1|A|A|257
8VIO|1|A|G|258

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35