IL_8VIO_042
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CGAAGACAA*UCAAG
- Length
- 14 nucleotides
- Bulged bases
- 8VIO|1|A|A|1164, 8VIO|1|A|A|1229
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_042 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.285
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8VIO|1|A|C|1161
8VIO|1|A|G|1162
8VIO|1|A|A|1163
8VIO|1|A|A|1164
8VIO|1|A|G|1165
8VIO|1|A|A|1166
8VIO|1|A|C|1167
8VIO|1|A|A|1168
8VIO|1|A|A|1169
*
8VIO|1|A|U|1226
8VIO|1|A|C|1227
8VIO|1|A|A|1228
8VIO|1|A|A|1229
8VIO|1|A|G|1230
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L6
- Chain I
- 50S ribosomal protein L10
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