IL_8VIO_058

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

8VIO|1|A|U|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_058 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2569

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8VIO|1|A|C|1638
8VIO|1|A|G|1639
8VIO|1|A|A|1640
8VIO|1|A|U|1641
8VIO|1|A|G|1642
*
8VIO|1|A|C|1797
8VIO|1|A|U|1798
8VIO|1|A|A|1799
8VIO|1|A|G|1800

Current chains

Chain A

23S ribosomal RNA

Nearby chains