IL_8VIO_091
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GUGUAGGAUAG*UC
- Length
- 13 nucleotides
- Bulged bases
- 8VIO|1|A|U|2334, 8VIO|1|A|A|2337, 8VIO|1|A|G|2339, 8VIO|1|A|U|2341, 8VIO|1|A|A|2342
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_091 not in the Motif Atlas
- Homologous match to IL_3U4M_002
- Geometric discrepancy: 0.5767
- The information below is about IL_3U4M_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32056.1
- Basepair signature
- cWW-L-cWW-L-L-tWH-R-L-R-L
- Number of instances in this motif group
- 3
Unit IDs
8VIO|1|A|G|2333
8VIO|1|A|U|2334
8VIO|1|A|G|2335
8VIO|1|A|U|2336
8VIO|1|A|A|2337
8VIO|1|A|G|2338
8VIO|1|A|G|2339
8VIO|1|A|A|2340
8VIO|1|A|U|2341
8VIO|1|A|A|2342
8VIO|1|A|G|2343
*
8VIO|1|A|U|2401
8VIO|1|A|C|2402
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
Coloring options: