IL_8VIO_157
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_157 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.1195
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VIO|1|a|G|653
8VIO|1|a|G|654
8VIO|1|a|A|655
8VIO|1|a|A|656
8VIO|1|a|U|657
*
8VIO|1|a|G|693
8VIO|1|a|G|694
8VIO|1|a|A|695
8VIO|1|a|A|696
8VIO|1|a|C|697
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain l
- 30S ribosomal protein S6
- Chain q
- 30S ribosomal protein S11
- Chain r
- 30S Ribosomal Protein S18
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