IL_8VIO_162
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_162 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.0931
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8VIO|1|a|G|869
8VIO|1|a|G|870
8VIO|1|a|A|871
8VIO|1|a|G|872
8VIO|1|a|U|873
8VIO|1|a|A|874
8VIO|1|a|C|875
8VIO|1|a|G|876
*
8VIO|1|a|U|887
8VIO|1|a|A|888
8VIO|1|a|A|889
8VIO|1|a|A|890
8VIO|1|a|A|891
8VIO|1|a|C|892
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Conserved domain protein
- Chain s
- 30S ribosomal protein S12
Coloring options: