IL_8VIO_165

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8VIO|1|a|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_165 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.1935

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

8VIO|1|a|G|915
8VIO|1|a|C|916
8VIO|1|a|A|917
*
8VIO|1|a|U|1363
8VIO|1|a|U|1364
8VIO|1|a|C|1365
8VIO|1|a|C|1366
8VIO|1|a|C|1367

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain m

30S ribosomal protein S7

Chain o

30S ribosomal protein S9