IL_8VIO_167

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GACAU*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_167 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.2568

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8VIO|1|a|G|975
8VIO|1|a|A|976
8VIO|1|a|C|977
8VIO|1|a|A|978
8VIO|1|a|U|979
*
8VIO|1|a|G|1024
8VIO|1|a|C|1025

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S3

Chain u

30S Ribosomal Protein S14