IL_8VIO_177
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- UACAAAG*UUUCAAAG
- Length
- 15 nucleotides
- Bulged bases
- 8VIO|1|a|U|1266, 8VIO|1|a|U|1267
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_177 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.5421
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VIO|1|a|U|1228
8VIO|1|a|A|1229
8VIO|1|a|C|1230
8VIO|1|a|A|1231
8VIO|1|a|A|1232
8VIO|1|a|A|1233
8VIO|1|a|G|1234
*
8VIO|1|a|U|1265
8VIO|1|a|U|1266
8VIO|1|a|U|1267
8VIO|1|a|C|1268
8VIO|1|a|A|1269
8VIO|1|a|A|1270
8VIO|1|a|A|1271
8VIO|1|a|G|1272
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain m
- 30S ribosomal protein S7
- Chain o
- 30S ribosomal protein S9
- Chain p
- 30S ribosomal protein S10
- Chain u
- 30S Ribosomal Protein S14
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