IL_8VK0_032

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GCUACU*AAAC

Length

10 nucleotides

Bulged bases

8VK0|1|A|U|981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK0_032 not in the Motif Atlas

Homologous match to IL_4WF9_033

Geometric discrepancy: 0.128

The information below is about IL_4WF9_033

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

8VK0|1|A|G|979
8VK0|1|A|C|980
8VK0|1|A|U|981
8VK0|1|A|A|982
8VK0|1|A|C|983
8VK0|1|A|U|984
*
8VK0|1|A|A|1024
8VK0|1|A|A|1025
8VK0|1|A|A|1026
8VK0|1|A|C|1027

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain N

Large ribosomal subunit protein uL16