IL_8VK0_034

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK0_034 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.3591

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8VK0|1|A|C|991
8VK0|1|A|C|992
8VK0|1|A|G|993
8VK0|1|A|A|994
8VK0|1|A|U|995
8VK0|1|A|G|996
*
8VK0|1|A|C|1012
8VK0|1|A|U|1013
8VK0|1|A|G|1014
8VK0|1|A|A|1015
8VK0|1|A|C|1016
8VK0|1|A|G|1017

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain W

50S ribosomal protein L25