IL_8VK0_108

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8VK0|1|A|G|2800, 8VK0|1|A|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK0_108 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1056

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8VK0|1|A|C|2734
8VK0|1|A|U|2735
8VK0|1|A|C|2736
*
8VK0|1|A|G|2798
8VK0|1|A|C|2799
8VK0|1|A|G|2800
8VK0|1|A|A|2801
8VK0|1|A|G|2802

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain D

50S ribosomal protein L3

Chain b

50S ribosomal protein L32