IL_8VK7_013

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

8VK7|1|A|G|591, 8VK7|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_013 not in the Motif Atlas

Geometric match to IL_5TBW_014

Geometric discrepancy: 0.1314

The information below is about IL_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8VK7|1|A|G|569
8VK7|1|A|U|570
8VK7|1|A|A|571
8VK7|1|A|C|572
*
8VK7|1|A|G|583
8VK7|1|A|A|584
8VK7|1|A|G|585
8VK7|1|A|U|586
8VK7|1|A|G|587
8VK7|1|A|A|588
8VK7|1|A|A|589
8VK7|1|A|A|590
8VK7|1|A|G|591
8VK7|1|A|A|592
8VK7|1|A|G|593
8VK7|1|A|U|594
8VK7|1|A|A|595
8VK7|1|A|C|596

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S Ribosomal Protein L22

Chain V

50S ribosomal protein L24