IL_8VK7_018

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UUAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_018 not in the Motif Atlas

Homologous match to IL_9DFE_014

Geometric discrepancy: 0.2327

The information below is about IL_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VK7|1|A|U|699
8VK7|1|A|U|700
8VK7|1|A|A|701
8VK7|1|A|A|702
8VK7|1|A|C|703
*
8VK7|1|A|G|712
8VK7|1|A|G|713
8VK7|1|A|U|714
8VK7|1|A|A|715
8VK7|1|A|G|716

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain M

50S ribosomal protein L15