IL_8VK7_044

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8VK7|1|A|A|1206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_044 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.2274

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK7|1|A|G|1205
8VK7|1|A|A|1206
8VK7|1|A|G|1207
8VK7|1|A|U|1208
8VK7|1|A|G|1209
*
8VK7|1|A|C|1218
8VK7|1|A|U|1219
8VK7|1|A|C|1220

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36