IL_8VK7_081

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GUUUGUGUAGGAUAGGUG*CACUCUGAU

Length

27 nucleotides

Bulged bases

8VK7|1|A|U|2332, 8VK7|1|A|U|2334, 8VK7|1|A|G|2335, 8VK7|1|A|G|2338, 8VK7|1|A|U|2341, 8VK7|1|A|A|2342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK7|1|A|G|2329
8VK7|1|A|U|2330
8VK7|1|A|U|2331
8VK7|1|A|U|2332
8VK7|1|A|G|2333
8VK7|1|A|U|2334
8VK7|1|A|G|2335
8VK7|1|A|U|2336
8VK7|1|A|A|2337
8VK7|1|A|G|2338
8VK7|1|A|G|2339
8VK7|1|A|A|2340
8VK7|1|A|U|2341
8VK7|1|A|A|2342
8VK7|1|A|G|2343
8VK7|1|A|G|2344
8VK7|1|A|U|2345
8VK7|1|A|G|2346
*
8VK7|1|A|C|2398
8VK7|1|A|A|2399
8VK7|1|A|C|2400
8VK7|1|A|U|2401
8VK7|1|A|C|2402
8VK7|1|A|U|2403
8VK7|1|A|G|2404
8VK7|1|A|A|2405
8VK7|1|A|U|2406

Current chains

Chain A

23S ribosomal RNA

Nearby chains