IL_8VK7_085

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CAA*UGUUG

Length

8 nucleotides

Bulged bases

8VK7|1|A|U|2543, 8VK7|1|A|U|2544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_085 not in the Motif Atlas

Homologous match to IL_9DFE_088

Geometric discrepancy: 0.2772

The information below is about IL_9DFE_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

8VK7|1|A|C|2521
8VK7|1|A|A|2522
8VK7|1|A|A|2523
*
8VK7|1|A|U|2541
8VK7|1|A|G|2542
8VK7|1|A|U|2543
8VK7|1|A|U|2544
8VK7|1|A|G|2545

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S Ribosomal Protein L5

Chain P

50S Ribosomal Protein L18