IL_8VK7_087

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUC*GG

Length

5 nucleotides

Bulged bases

8VK7|1|A|U|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_087 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.3502

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8VK7|1|A|C|2625
8VK7|1|A|U|2626
8VK7|1|A|C|2627
*
8VK7|1|A|G|2638
8VK7|1|A|G|2639

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain c

50S Ribosomal Protein L33