IL_8VKI_033

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKI_033 not in the Motif Atlas

Geometric match to IL_3FTE_001

Geometric discrepancy: 0.3224

The information below is about IL_3FTE_001

Detailed Annotation

Quadruple sheared

Broad Annotation

Quadruple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VKI|1|A|C|991
8VKI|1|A|C|992
8VKI|1|A|G|993
8VKI|1|A|A|994
8VKI|1|A|U|995
8VKI|1|A|G|996
*
8VKI|1|A|C|1012
8VKI|1|A|U|1013
8VKI|1|A|G|1014
8VKI|1|A|A|1015
8VKI|1|A|C|1016
8VKI|1|A|G|1017

Current chains

Chain A

23S ribosomal RNA

Nearby chains