IL_8VKI_044

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

8VKI|1|A|U|1179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKI_044 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.3363

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

8VKI|1|A|G|1177
8VKI|1|A|U|1178
8VKI|1|A|U|1179
8VKI|1|A|G|1180
*
8VKI|1|A|C|1194
8VKI|1|A|A|1195
8VKI|1|A|C|1196
8VKI|1|A|C|1197

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11