IL_8VKI_047
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGGUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8VKI|1|A|U|1325
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VKI_047 not in the Motif Atlas
- Homologous match to IL_5J7L_288
- Geometric discrepancy: 0.1596
- The information below is about IL_5J7L_288
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
8VKI|1|A|C|1322
8VKI|1|A|G|1323
8VKI|1|A|G|1324
8VKI|1|A|U|1325
8VKI|1|A|G|1326
8VKI|1|A|A|1327
8VKI|1|A|A|1328
8VKI|1|A|G|1329
*
8VKI|1|A|U|1349
8VKI|1|A|G|1350
8VKI|1|A|G|1351
8VKI|1|A|A|1352
8VKI|1|A|G|1353
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain R
- 50S Ribosomal Protein L20
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