IL_8VKI_051

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

8VKI|1|A|C|1436, 8VKI|1|A|G|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKI_051 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.5673

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8VKI|1|A|G|1434
8VKI|1|A|C|1435
8VKI|1|A|C|1436
8VKI|1|A|A|1437
8VKI|1|A|G|1438
*
8VKI|1|A|C|1446
8VKI|1|A|G|1447
8VKI|1|A|C|1448

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S Ribosomal Protein L22

Chain U

50S Ribosomal Protein L23