IL_8VKV_043

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

8VKV|1|D|U|1030, 8VKV|1|D|C|1031, 8VKV|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|D|G|1003
8VKV|1|D|A|1004
8VKV|1|D|A|1005
8VKV|1|D|G|1006
*
8VKV|1|D|U|1023
8VKV|1|D|G|1024
8VKV|1|D|U|1025
8VKV|1|D|G|1026
8VKV|1|D|C|1027
8VKV|1|D|C|1028
8VKV|1|D|U|1029
8VKV|1|D|U|1030
8VKV|1|D|C|1031
8VKV|1|D|G|1032
8VKV|1|D|G|1033
8VKV|1|D|G|1034
8VKV|1|D|A|1035
8VKV|1|D|A|1036
8VKV|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain AE

DNA-directed RNA polymerase subunit beta'

Chain S

30S ribosomal protein S14