IL_8VKV_067
3D structure
- PDB id
- 8VKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VKV_067 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.0645
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8VKV|1|a|G|188
8VKV|1|a|G|189
8VKV|1|a|A|190
8VKV|1|a|A|191
8VKV|1|a|C|192
8VKV|1|a|U|193
8VKV|1|a|G|194
*
8VKV|1|a|C|201
8VKV|1|a|U|202
8VKV|1|a|A|203
8VKV|1|a|A|204
8VKV|1|a|G|205
8VKV|1|a|U|206
8VKV|1|a|A|207
8VKV|1|a|C|208
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L28
- Chain o
- 50S ribosomal protein L35
- Chain u
- 50S ribosomal protein L15
Coloring options: